estimation...
well maybe the files you copied in was heavy. Hows your RAMs? maybe also that your cpu processor, mighty p4, gets a little bit hotter than normal. When that happens, it'll eventually greatly slow down your entire system...
your computer takes a lot of juice in copying stuff I see..your specs are fine though, but after I scan/analyze my drive C:, and then defrag, all turn up fine and smooth at anything...