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The blue screen on startup was just running chkdisk because one of your hard disks wasn't unmounted properly (or you didn't shut down the right way) it doesn't mean there was a problem, it fixes it automatically.
To run chkdisk manually, go to my computer, right click your disk drive (probably C:\) and click properties, go to the tools tab and click the "Error Checking" button. It may say the disk is in use and to schedule it for the next boot, that's fine. It will probably just run through though. Be sure to shut down any other programs like servers, firewalls or Anti-Virus first, otherwise it won't get through it, and leave the computer alone while it runs it.
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