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Well first of I would put jumpers on all your HDD, and set them to master/slave.
Second I would flash the BIOS, might not fix anything but it can't really hurt, plus you got your old one on the 2ndare BIOS so you can always go back.
Then I read somewhere that you should never have any optical drives on IDE 3 and 4. Not sure about this, you should do some reading up on it, or E-mail gigabyte.
It might have been a glitch that made it restart like that, it happens, no code is perfect and memory errors do happen.
As to why it wouldn't detect your drives, well some comps are very finicky, and like to be very anoying before they start to work properly. I would say don't worry about it for now, and see if it happens again, then you can start to troubleshoot. Its hard to do so if it only happend once.
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-=Marcin=-
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