Well, I totally do not agree that changing the frame rate would be a
better idea. In fact, I don't even know if it's a valid idea at all. If it is possible then I have no clue how it'd be done.
What file format are you writing the animation to that's going to allow a staggered frame rate? Then what player do you plan on using that's going to playback a flick that has an inconsistent frame rate? I don't think it's even possible.
But let's just say maybe it is possible...I still think it'll yield extremely poor results. If you're really trying to imitate one of those Matrix shots, then you're surely going to include the camera pan in conjunction with the slo-mo. Right? Well, think about it. If you achieve the slo-mo through drastically reducing the frame rate, then there goes your smooth cameral pan out the window. It'll look like a choppy slide-show.
I'm sorry that there is no "convert scene to cool Matrix slo-mo style" single click button to push and have it do all the work for you. Maybe one day. But by the time everyone has that button then the effect will have already become old-hat. (And truthfully, it already is old-hat thanks to Hollywood's keen ability to take anything that is ultra-cool and just run it into the ground.)
So,...good luck. I hope you find
some way to accomplish your goal here. If I thought it were possible then I'd continue to offer any help I could. I just don't know how one could manipulate the frame rate during playback and still have a file that is a functional and conforms to any of the known movie file formats.