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Have you checked the manual for what the beeping means? It could be anything from an overtemp to a warning that it's not getting a signal from the CPU fan tach lead.
Start looking in the bios on the system health page. There are settings for enabling or disabling warning beeps for CPU temp, CPU fan failure, system fan failure, and power fan failure. You might want to check these settings. (Page 63 in your motherboard manual).
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