Welshie, I found the key but it is already set to autocheck autochk *
Is this because the system has booted as normal and therefore did not want to do a disk check? Maybe if I somehow looked in the registry on the first boot, would it be there?
There is current control set, controlset001 and controlset002 folders and they are all the same.
LATEST NEWS ! - Fixed it !!!! - Just deleted the whole contents of the box in the above key, worked fine.
Thanks for everyones help, especially welshie for pointing me in the right direction