I still dont know that I EXACTLY follow what you did.....I know that sometimes when I mess with ghost that I have to do a 'fdisk /mbr" to get it to boot.
Now that is with w98se...I am not totally sure what it would be with w2000...maybe someone else can chime in...perhaps it would be "fixmbr"? I suppose you might need to download some w2000 boot floppies from
www.bootdisk.com