I bought a custom built pc from comp usa so I'm really not sure about the dvd decoding software, but everything in it was what I bought it with (except the new video card). I don't know if that helps.
I also thought that I might have knocked something loose, but do you think the computer would say the dvd rom is working properly if a cable was unplugged. I'm kind of new to this hardware intallation thing so if I did knock something loose I don't know what it looks like and where it's supposed to be plugged in.

I guess I should have figured that out before I started messing around, but I guess that the only way to learn right?