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Well, in college, a laptop is great for writing papers, taking notes and doing other things on the road. The minuses are that it is much easier to steal (happens a lot in college) and it will be poor at playing games by the time you get to college, provided you are a gamer. But, in regards to word processing and running any type of scholarly software you want, a laptop bought now would get you all the way through college. I say that b/c colleges usually do not buy high end software, even for engineering departments.
If you want flexibility in functionality, then the desktop is the way to go. But, you lose the ability to work on your system in the library and away from the sterile computer labs, which I always hated.
So, work-wise, a laptop is the best option, but is less fun than a desktop.
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