im not going to pretend to know a thing about the cavalier, but heres my guesses.
1. not sure...
2. does the pedal pulse when it clunks? could also very well be a binding suspension joint somewhere.
3. drive like a granny

4. idle is most likely too low...bump up the idle or check the motor mounts.
5. heck if i know...maybe the powerband is better suited for this gear.
6. not sure with a fwd (shows what i know about chebby, the cav is fwd right? i hope so)
7. tires? i know it can smell that way if excess gas goes through the catalitic convertor...could also lead to believe that the motor is running rich causing some of your other troubles